KEGG Decoder Heatmap

Authors

Benjamin Tully (USC), Taylor Reiter (UC Davis), Roth Conrad (Georgia Tech), Jay Osvatic (Univeristy of Vienna), Luiz Irber (UC Davis)

Summary

This notebook contains a workflow for parsing through KEGG-Koala outputs (including blastKOALA, ghostKOALA, KOFAMSCAN) to determine the completeness of various metabolic pathways.

Links

Github Repository:

• KEGG Decoder Binder Repository
• KEGG Decoder Repository

Open Notebook (Binder):